Hello Marcin,
Which policy, rule or document of RIPE describes that if ISP giving to customer more than one IP address then those addresses have to/should be saved into RIPE database as independent entry of inetnum?
You can find the relevant information in http://www.ripe.net/ripe/docs/ripe-424.html#4: "All assignments and allocations must be registered in the RIPE Database."  In your case, you have to register every network and provide information who it is assigned to. Also look at http://www.ripe.net/ripe/docs/ripe-424.html#62, which explains the difference between network infrastructure and end user networks.
 
Is this what you were looking for?
Sander Steffann